CABS-dock: 933b31ad7c4217b

Project name: 933b31ad7c4217b

Status: done

submitted: 2026-04-20 01:43:48, status changed: 2026-04-20 08:31:59

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	IFGGFMLGVKSISGMAFSFY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEEECEEEECEECEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.8753	0.872385	3.45917	47
cluster_2.pdb ( medoid)	22.6339	2.42998	22.9038	55
cluster_3.pdb ( medoid)	20.2479	5.92653	22.0058	120
cluster_4.pdb ( medoid)	18.0338	6.43238	44.1573	116
cluster_5.pdb ( medoid)	17.026	10.9244	30.9038	186
cluster_6.pdb ( medoid)	12.6692	9.39284	22.8589	119
cluster_7.pdb ( medoid)	10.8548	12.7133	25.8812	138
cluster_8.pdb ( medoid)	6.28207	15.7591	30.6476	99
cluster_9.pdb ( medoid)	4.58925	12.8561	30.2088	59
cluster_10.pdb ( medoid)	2.74253	22.2422	44.0888	61