CABS-dock: 937ab34a56fb76

Project name: 937ab34a56fb76

Status: done

submitted: 2025-08-01 07:27:24, status changed: 2025-08-01 13:38:27

Project settings

Protein sequence(s)	LSVPAEVTVILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAHLDGAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSELYL input pdb
Peptide sequence	KSIRDTPAKNA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.2638	5.18368	13.6664	245
cluster_2.pdb ( medoid)	45.4877	1.12118	4.02788	51
cluster_3.pdb ( medoid)	34.8438	3.12825	24.4292	109
cluster_4.pdb ( medoid)	17.319	9.41164	41.9254	163
cluster_5.pdb ( medoid)	15.4406	7.2536	28.8664	112
cluster_6.pdb ( medoid)	12.8198	5.85033	17.2882	75
cluster_7.pdb ( medoid)	8.16491	5.63387	27.3843	46
cluster_8.pdb ( medoid)	7.71227	11.929	44.6051	92
cluster_9.pdb ( medoid)	5.12415	12.4899	44.8407	64
cluster_10.pdb ( medoid)	3.94782	10.8921	28.9223	43