CABS-dock: 9409e67f688237d

Project name: 9409e67f688237d

Status: done

submitted: 2025-08-25 03:27:40, status changed: 2025-08-25 10:50:34

Project settings

Protein sequence(s)	GSHSMRRYFFTSVSRPGRGEEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEEYWDDGETRRKVKAHSSQTHRVDLGTLRRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRRGYHQYAYDGKDYIALKEDLRRSWTAADMAAQQTTKHKWEAAHVAEQLRAYLEGTCVEEWLRRYLEENGKETLQRTDAPKTHMMTHHAVSDHHEATLRCWALSSFYPAEITTLTWQRDGEDQTQDTELVEETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWMIQRTTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSSKKDWSFYLLYYTEFTPTEKDEYACCRVNHVTLSQQPKIVKWDRDM input pdb
Peptide sequence	FPSFAGLRPTF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	115.802	0.863543	2.00834	100
cluster_2.pdb ( medoid)	40.6837	2.23677	8.49696	91
cluster_3.pdb ( medoid)	37.8114	2.82984	8.25039	107
cluster_4.pdb ( medoid)	28.951	3.52319	9.21616	102
cluster_5.pdb ( medoid)	23.7672	5.72216	29.514	136
cluster_6.pdb ( medoid)	9.14495	6.01425	29.1762	55
cluster_7.pdb ( medoid)	8.38931	14.3039	44.0734	120
cluster_8.pdb ( medoid)	8.04013	13.557	37.7743	109
cluster_9.pdb ( medoid)	7.52852	13.15	37.6747	99
cluster_10.pdb ( medoid)	7.01765	11.5423	36.1675	81