CABS-dock: 955745f8e6fd104

Project name: 955745f8e6fd104

Status: done

submitted: 2026-05-01 02:44:57, status changed: 2026-05-01 07:51:09

Project settings

Protein sequence(s)	PKVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT input pdb
Peptide sequence	EGQAVAFR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	71.4965	1.74834	12.2214	125
cluster_2.pdb ( medoid)	48.953	1.24609	8.08158	61
cluster_3.pdb ( medoid)	47.4056	3.4806	24.561	165
cluster_4.pdb ( medoid)	45.6849	2.45158	24.7799	112
cluster_5.pdb ( medoid)	15.8743	7.49638	38.6079	119
cluster_6.pdb ( medoid)	15.4098	9.73404	46.5139	150
cluster_7.pdb ( medoid)	14.7972	3.4466	7.37901	51
cluster_8.pdb ( medoid)	11.5549	7.70236	38.4644	89
cluster_9.pdb ( medoid)	11.1893	9.29462	30.6329	104
cluster_10.pdb ( medoid)	2.11356	11.3552	28.0421	24