CABS-dock: RO33.2

Project name: RO33.2_USP7

Status: done

submitted: 2026-01-12 05:27:30, status changed: 2026-01-12 09:25:38

Project settings

Protein sequence(s)	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWGARAHSS input pdb
Peptide sequence	DAVSTQSAKNPPGATVPSGTASTKGAIR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.0361	6.38696	36.417	211
cluster_2.pdb ( medoid)	24.4943	5.83808	22.3469	143
cluster_3.pdb ( medoid)	13.7271	7.64909	19.7259	105
cluster_4.pdb ( medoid)	10.6051	15.9357	34.832	169
cluster_5.pdb ( medoid)	9.75537	9.84073	29.3936	96
cluster_6.pdb ( medoid)	8.21728	5.23288	10.1636	43
cluster_7.pdb ( medoid)	7.15869	10.0577	31.1144	72
cluster_8.pdb ( medoid)	5.62596	15.9973	35.6248	90
cluster_9.pdb ( medoid)	3.47413	11.2258	25.6253	39
cluster_10.pdb ( medoid)	2.23321	14.3291	29.5543	32