CABS-dock: 96a53ddb357bc71

Project name: 96a53ddb357bc71

Status: done

submitted: 2025-11-13 12:48:20, status changed: 2025-11-13 17:08:05

Project settings

Protein sequence(s)	PMLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHERSPESVAFPMFQSHWYSGMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIIMMLMARLTWASHEKMHEGDEGPGHHHKPGLGE input pdb
Peptide sequence	VEYQRARSHYIQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.3708	4.12211	24.2021	220
cluster_2.pdb ( medoid)	43.7173	3.43114	18.6351	150
cluster_3.pdb ( medoid)	42.741	3.15856	15.6178	135
cluster_4.pdb ( medoid)	31.044	1.90053	6.13602	59
cluster_5.pdb ( medoid)	25.0654	4.34862	14.9959	109
cluster_6.pdb ( medoid)	22.5943	5.66516	27.719	128
cluster_7.pdb ( medoid)	14.0789	4.11964	32.7697	58
cluster_8.pdb ( medoid)	10.5676	8.32733	17.8799	88
cluster_9.pdb ( medoid)	6.42211	4.82707	29.9909	31
cluster_10.pdb ( medoid)	5.99624	3.66897	6.05384	22