CABS-dock: USP7_p53

Project name: USP7_p53_control

Status: done

submitted: 2026-01-13 15:18:55, status changed: 2026-01-13 19:11:34

Project settings

Protein sequence(s)	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW input pdb
Peptide sequence	GARAHSS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.713	2.59858	20.1969	98
cluster_2.pdb ( medoid)	24.7572	5.04904	19.1786	125
cluster_3.pdb ( medoid)	21.4794	7.68179	19.6251	165
cluster_4.pdb ( medoid)	17.0125	9.46362	37.1839	161
cluster_5.pdb ( medoid)	11.8216	5.32921	16.625	63
cluster_6.pdb ( medoid)	10.4517	12.0555	30.2921	126
cluster_7.pdb ( medoid)	10.1165	5.73322	25.0422	58
cluster_8.pdb ( medoid)	7.31958	8.74367	32.9129	64
cluster_9.pdb ( medoid)	6.34599	8.19415	30.7451	52
cluster_10.pdb ( medoid)	6.08789	14.4549	49.2116	88