CABS-dock: 1uao

Project name: 1uao

Status: done

submitted: 2025-12-12 14:26:55, status changed: 2025-12-12 18:06:31

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	GYDPETGTWG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.0913	5.45659	28.1487	126
cluster_2.pdb ( medoid)	20.6062	4.51321	28.2143	93
cluster_3.pdb ( medoid)	18.2001	11.868	38.3483	216
cluster_4.pdb ( medoid)	15.2202	7.68715	27.5691	117
cluster_5.pdb ( medoid)	10.513	10.0828	22.4164	106
cluster_6.pdb ( medoid)	8.30799	9.38855	25.9646	78
cluster_7.pdb ( medoid)	8.15027	10.6745	23.8006	87
cluster_8.pdb ( medoid)	6.8045	10.7282	23.7551	73
cluster_9.pdb ( medoid)	6.7232	9.96549	19.1757	67
cluster_10.pdb ( medoid)	5.2745	7.01488	25.6245	37