CABS-dock: pep12103

Project name: pep12103

Status: done

submitted: 2026-02-14 07:03:45, status changed: 2026-02-14 17:21:59

Project settings

Protein sequence(s)	GFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ input pdb
Peptide sequence	MNFGYFSYNP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	46.5974	2.14604	5.08728	100
cluster_2.pdb ( medoid)	38.1773	3.14323	10.923	120
cluster_3.pdb ( medoid)	28.8243	4.40601	14.5236	127
cluster_4.pdb ( medoid)	28.4792	5.0212	24.0007	143
cluster_5.pdb ( medoid)	21.7461	8.55326	29.3772	186
cluster_6.pdb ( medoid)	17.7903	6.97007	16.1146	124
cluster_7.pdb ( medoid)	7.77263	5.27492	10.8547	41
cluster_8.pdb ( medoid)	4.65758	14.8146	39.3104	69
cluster_9.pdb ( medoid)	3.3561	18.1759	36.6863	61
cluster_10.pdb ( medoid)	3.32708	8.71635	21.1985	29