CABS-dock: 995315dbfacd7ea

Project name: 995315dbfacd7ea

Status: done

submitted: 2025-04-15 20:29:56, status changed: 2025-04-15 20:41:59

Project settings

Protein sequence(s)	VESQTNGIIR input pdb
Peptide sequence	VESQTNGIIR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.4728	6.54527	17.5521	134
cluster_2.pdb ( medoid)	14.7289	9.43725	29.3244	139
cluster_3.pdb ( medoid)	10.7784	8.44284	26.7211	91
cluster_4.pdb ( medoid)	10.226	9.87676	22.1734	101
cluster_5.pdb ( medoid)	9.54204	8.17435	30.5543	78
cluster_6.pdb ( medoid)	9.3126	9.55694	30.0775	89
cluster_7.pdb ( medoid)	8.92259	12.2162	35.6636	109
cluster_8.pdb ( medoid)	8.765	13.2345	31.0069	116
cluster_9.pdb ( medoid)	8.18985	9.89029	24.0305	81
cluster_10.pdb ( medoid)	6.36986	9.73333	24.7276	62