CABS-dock: 9a9b55048702cab

Project name: 9a9b55048702cab

Status: done

submitted: 2026-04-14 05:19:51, status changed: 2026-04-14 12:57:25

Project settings

Protein sequence(s)	MPIEKQVVALPSGLKVHVERHVFDPAFETVILVNGALATTASFGQTIRYLGERVNAVCFDLPYAGQSRQHNPGEYILTKDDEVEILLHLAERFEPSFLLSVSWGGVASLFALARGCASVRRAVIASFSPFLNDAMTDYVTRARDHIAAGENLKAAQLLNDTVGRYLPRIMKLYNYRYLTKLPRTEQDQVAFHVDQILSMRPEQYLPEFRQIGCAVKFINGELDEYTTASDVRRLAAYVRRAEFATIRQAGHFLDLEGRQQQEQLRAAILGFFGDERASAARDDAQDETLAPLGQLPALS input pdb
Peptide sequence	VVIPIELR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.997	6.57212	21.2873	184
cluster_2.pdb ( medoid)	18.1643	6.82657	36.8196	124
cluster_3.pdb ( medoid)	15.3879	6.82356	28.6278	105
cluster_4.pdb ( medoid)	14.948	6.28846	29.2742	94
cluster_5.pdb ( medoid)	11.4618	6.54346	19.1298	75
cluster_6.pdb ( medoid)	10.6266	10.6337	29.1451	113
cluster_7.pdb ( medoid)	7.67133	14.8605	42.173	114
cluster_8.pdb ( medoid)	7.13911	10.7857	36.4121	77
cluster_9.pdb ( medoid)	6.70584	8.64918	32.8163	58
cluster_10.pdb ( medoid)	4.00961	13.9665	32.3854	56