CABS-dock: 9ab08bf54f0cce

Project name: 9ab08bf54f0cce

Status: done

submitted: 2026-01-19 17:33:39, status changed: 2026-01-19 20:11:13

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	RVIFVQCGSNCR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	44.0456	2.4293	19.7563	107
cluster_2.pdb ( medoid)	24.7919	4.47727	20.6278	111
cluster_3.pdb ( medoid)	21.4506	5.87396	16.5955	126
cluster_4.pdb ( medoid)	18.4856	5.89648	21.1474	109
cluster_5.pdb ( medoid)	17.1058	9.17818	26.8333	157
cluster_6.pdb ( medoid)	12.2353	9.64421	20.7245	118
cluster_7.pdb ( medoid)	9.21874	12.1492	28.5508	112
cluster_8.pdb ( medoid)	6.08714	9.03544	19.7805	55
cluster_9.pdb ( medoid)	5.95247	9.91185	20.1948	59
cluster_10.pdb ( medoid)	5.41573	8.49378	19.7802	46