CABS-dock: 9b5b21d5c33296d

Project name: 9b5b21d5c33296d

Status: done

submitted: 2026-07-10 19:59:40, status changed: 2026-07-11 01:17:14

Project settings

Protein sequence(s)	DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCL input pdb
Peptide sequence	SSMKLSFRARAYGFRGPGPQL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEEEHHHCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.6765	4.76075	23.5542	127
cluster_2.pdb ( medoid)	23.1101	5.58198	23.9208	129
cluster_3.pdb ( medoid)	18.1844	9.12873	24.221	166
cluster_4.pdb ( medoid)	13.7901	9.06449	33.4772	125
cluster_5.pdb ( medoid)	13.3132	5.40816	24.2372	72
cluster_6.pdb ( medoid)	11.3078	9.46252	28.0247	107
cluster_7.pdb ( medoid)	7.36328	5.56817	13.0143	41
cluster_8.pdb ( medoid)	5.33223	17.066	45.042	91
cluster_9.pdb ( medoid)	4.42174	10.6293	26.0338	47
cluster_10.pdb ( medoid)	2.02198	24.2336	57.2276	49