CABS-dock: 1n09

Project name: 1n09

Status: done

submitted: 2025-12-12 14:09:04, status changed: 2025-12-12 15:36:10

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	CTWEGNKLTC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.9645	3.06024	18.2655	107
cluster_2.pdb ( medoid)	23.4262	6.95803	32.0364	163
cluster_3.pdb ( medoid)	17.9316	7.24978	23.7706	130
cluster_4.pdb ( medoid)	14.4265	5.2681	11.1528	76
cluster_5.pdb ( medoid)	11.9216	10.9046	31.5382	130
cluster_6.pdb ( medoid)	9.99726	8.20225	27.1458	82
cluster_7.pdb ( medoid)	9.64731	10.8839	31.8792	105
cluster_8.pdb ( medoid)	8.437	13.1563	29.5089	111
cluster_9.pdb ( medoid)	5.08592	9.43782	17.3219	48
cluster_10.pdb ( medoid)	4.98367	9.63146	26.4492	48