CABS-dock: PEPTIDE7

Project name: PEPTIDE7

Status: done

submitted: 2025-07-02 09:28:00, status changed: 2025-07-02 12:12:14

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FYNYKKI
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.9223	4.77484	18.7495	119
cluster_2.pdb ( medoid)	16.4153	7.49299	25.392	123
cluster_3.pdb ( medoid)	14.8579	7.20154	27.268	107
cluster_4.pdb ( medoid)	13.8533	10.9721	28.114	152
cluster_5.pdb ( medoid)	13.7963	9.49532	28.2599	131
cluster_6.pdb ( medoid)	11.3546	9.24733	19.8677	105
cluster_7.pdb ( medoid)	8.96542	11.377	23.0326	102
cluster_8.pdb ( medoid)	6.17406	13.2814	30.7804	82
cluster_9.pdb ( medoid)	5.53596	8.85122	28.4314	49
cluster_10.pdb ( medoid)	1.95537	15.3423	38.0637	30