CABS-dock: fnkk

Project name: fnkk

Status: done

submitted: 2025-07-02 05:58:03, status changed: 2025-07-02 11:50:52

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FNKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	74.7889	1.43069	19.7727	107
cluster_2.pdb ( medoid)	52.3586	2.44468	7.63801	128
cluster_3.pdb ( medoid)	32.199	6.70829	29.5976	216
cluster_4.pdb ( medoid)	26.3531	4.40175	17.7102	116
cluster_5.pdb ( medoid)	23.9563	5.05086	11.7354	121
cluster_6.pdb ( medoid)	8.69879	7.01247	26.122	61
cluster_7.pdb ( medoid)	6.49151	12.7859	35.7144	83
cluster_8.pdb ( medoid)	5.16699	11.4187	33.4079	59
cluster_9.pdb ( medoid)	4.73539	16.2605	39.2489	77
cluster_10.pdb ( medoid)	2.54029	12.597	33.8251	32