CABS-dock: TEST1

Project name: TEST1

Status: done

submitted: 2026-01-19 14:38:07, status changed: 2026-01-19 20:01:34

Project settings

Protein sequence(s)	EPKFTKCRSPERETFSCHWTDEVHGPIQLFYTRRNEWTQEWKECPDYVSAGENSCYFNSSFTSIWIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPEPKFTKCRSPERETFSCHWTDEVHGPIQLFYTRRNQEWKECPDYVSAGENSCYFNSSFTSIWIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQM input pdb
Peptide sequence	PTYLNVGMDSSKTDVQ
Simulation mc cycles	10
Peptide secondary structure psipred	CCCEECCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.8585	1.87528	17.7805	101
cluster_2.pdb ( medoid)	38.3777	2.60568	6.23109	100
cluster_3.pdb ( medoid)	23.6591	4.56484	20.8414	108
cluster_4.pdb ( medoid)	18.8144	7.1222	24.1124	134
cluster_5.pdb ( medoid)	18.4481	4.55332	31.5727	84
cluster_6.pdb ( medoid)	16.2869	7.12229	38.6119	116
cluster_7.pdb ( medoid)	13.9522	8.09907	26.1608	113
cluster_8.pdb ( medoid)	6.4259	15.8733	41.8017	102
cluster_9.pdb ( medoid)	5.94246	13.799	29.6978	82
cluster_10.pdb ( medoid)	4.46718	13.4313	26.1917	60