CABS-dock: RYBPcit53

Project name: RYBPcit53

Status: done

submitted: 2026-07-23 22:02:09, status changed: 2026-07-24 05:20:48

Project settings

Protein sequence(s)

PWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSPRNRGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSAQQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNKTLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLEEKVCSLLEPLGLQCTFINDFFTYHIRHGEVHCGTNVRRKPFSFKWWNMVP input pdb

Peptide sequence

KGTSTQKPRINSQLVAQQY

Simulation mc cycles

Peptide secondary structure

CCCCCCCCCCCCCCCCCCC

Contact information

645:A 6:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.3218	3.11621	12.2776	135
cluster_2.pdb ( medoid)	34.4446	7.25804	18.813	250
cluster_3.pdb ( medoid)	23.9339	6.51795	13.3843	156
cluster_4.pdb ( medoid)	22.7315	4.09125	14.548	93
cluster_5.pdb ( medoid)	22.5984	4.38085	9.97951	99
cluster_6.pdb ( medoid)	16.732	7.1121	17.7492	119
cluster_7.pdb ( medoid)	8.2258	6.32158	14.0475	52
cluster_8.pdb ( medoid)	5.98633	8.8535	19.6979	53
cluster_9.pdb ( medoid)	4.72836	5.07576	13.0982	24
cluster_10.pdb ( medoid)	2.87543	6.6077	11.4059	19