CABS-dock: 9e0923808dc728

Project name: 9e0923808dc728

Status: done

submitted: 2026-04-03 04:39:42, status changed: 2026-04-03 14:34:22

Project settings

Protein sequence(s)	GTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSKRPAATKKAGQAKKKK input pdb
Peptide sequence	RRASLRRASL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	45.0537	2.39714	29.7717	108
cluster_2.pdb ( medoid)	18.6395	6.22333	28.4755	116
cluster_3.pdb ( medoid)	14.0623	4.05339	8.09828	57
cluster_4.pdb ( medoid)	13.6799	5.62871	23.0442	77
cluster_5.pdb ( medoid)	13.3966	4.40411	16.4406	59
cluster_6.pdb ( medoid)	9.40115	9.46693	26.5954	89
cluster_7.pdb ( medoid)	6.85724	10.9374	24.0455	75
cluster_8.pdb ( medoid)	5.86236	15.5228	46.6716	91
cluster_9.pdb ( medoid)	4.62675	16.2101	47.1561	75
cluster_10.pdb ( medoid)	4.52852	15.6784	31.1576	71