CABS-dock: hnrnpab_chensinin1b_blind

Project name: hnrnpab_chensinin1b_blind_1

Status: done

submitted: 2026-03-13 05:04:21, status changed: 2026-03-13 13:10:09

Project settings

Protein sequence(s)	KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE input pdb
Peptide sequence	SKVWRHWRRFWHRAHRKL
Simulation mc cycles	100
Peptide secondary structure psipred	CHHHHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	60.5607	2.2787	7.54873	138
cluster_2.pdb ( medoid)	35.4824	1.38097	7.47311	49
cluster_3.pdb ( medoid)	18.1432	11.2439	42.8208	204
cluster_4.pdb ( medoid)	17.3896	10.811	35.2149	188
cluster_5.pdb ( medoid)	16.0006	1.99993	7.87143	32
cluster_6.pdb ( medoid)	14.9162	9.45283	24.6997	141
cluster_7.pdb ( medoid)	14.1474	3.11012	5.63786	44
cluster_8.pdb ( medoid)	7.70857	8.95108	15.5155	69
cluster_9.pdb ( medoid)	7.0378	12.7881	33.2703	90
cluster_10.pdb ( medoid)	5.61249	8.01784	20.437	45