CABS-dock: 9e8606417ff19f1

Project name: 9e8606417ff19f1

Status: done

submitted: 2026-03-09 15:20:42, status changed: 2026-03-09 17:56:48

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	VQLFGSNVY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.4861	4.94598	30.1461	131
cluster_2.pdb ( medoid)	17.2977	6.128	19.1628	106
cluster_3.pdb ( medoid)	15.1086	8.60435	31.7494	130
cluster_4.pdb ( medoid)	14.939	8.9698	25.4571	134
cluster_5.pdb ( medoid)	11.3438	7.93388	21.0873	90
cluster_6.pdb ( medoid)	11.2925	12.132	34.5775	137
cluster_7.pdb ( medoid)	10.8131	9.71047	23.9132	105
cluster_8.pdb ( medoid)	8.35922	6.69919	19.374	56
cluster_9.pdb ( medoid)	5.06352	12.4419	24.5054	63
cluster_10.pdb ( medoid)	3.81926	12.5679	33.6084	48