CABS-dock: 9f35fd9f8463e57

Project name: 9f35fd9f8463e57

Status: done

submitted: 2026-01-12 16:23:57, status changed: 2026-01-13 05:38:20

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	TPLDFSALSGKSPQPNTFGEQNTQQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	64.8844	1.5412	3.78418	100
cluster_2.pdb ( medoid)	20.6249	8.00003	23.9625	165
cluster_3.pdb ( medoid)	12.4031	8.62691	20.6723	107
cluster_4.pdb ( medoid)	10.0574	7.65609	31.1008	77
cluster_5.pdb ( medoid)	8.17049	6.48676	16.7394	53
cluster_6.pdb ( medoid)	7.91134	10.3649	32.6443	82
cluster_7.pdb ( medoid)	7.64997	12.8105	42.7594	98
cluster_8.pdb ( medoid)	7.3544	7.75046	24.4153	57
cluster_9.pdb ( medoid)	4.76021	8.82314	15.8281	42
cluster_10.pdb ( medoid)	1.42916	13.2945	20.8576	19