CABS-dock: 9f8786c11df80e

Project name: 9f8786c11df80e

Status: done

submitted: 2026-06-03 02:12:20, status changed: 2026-06-03 12:43:39

Project settings

Protein sequence(s)	MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPGHTMEVSC input pdb
Peptide sequence	SLVREFMKKLAE
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.6444	6.94726	22.6205	199
cluster_2.pdb ( medoid)	25.1938	4.04861	20.5757	102
cluster_3.pdb ( medoid)	23.4399	5.50344	31.8464	129
cluster_4.pdb ( medoid)	18.683	6.15532	40.8916	115
cluster_5.pdb ( medoid)	15.465	5.62562	16.2256	87
cluster_6.pdb ( medoid)	15.0019	10.532	38.8641	158
cluster_7.pdb ( medoid)	5.6965	11.235	41.0519	64
cluster_8.pdb ( medoid)	5.51855	10.1476	25.9086	56
cluster_9.pdb ( medoid)	4.31917	16.4383	34.9278	71
cluster_10.pdb ( medoid)	3.65521	5.19805	8.76173	19