CABS-dock: a0143e93937eef

Project name: a0143e93937eef

Status: done

submitted: 2025-05-09 08:54:43, status changed: 2025-05-09 21:55:13

Project settings

Protein sequence(s)	AVSMEGFSWGNYINSNSFIAAPVTCFKHAPMGTCWGDISENVRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHRFKRSDDGHFDTPPHLFAKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPAS input pdb
Peptide sequence	WEQKQVQIKTLEGEFSVTMW
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEEEEEECEEEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.1432	2.81169	26.1092	96
cluster_2.pdb ( medoid)	16.5118	7.1464	47.6407	118
cluster_3.pdb ( medoid)	15.0507	7.64082	40.5904	115
cluster_4.pdb ( medoid)	13.9446	7.81662	25.4226	109
cluster_5.pdb ( medoid)	13.423	7.97136	41.8228	107
cluster_6.pdb ( medoid)	11.4048	13.2401	42.2276	151
cluster_7.pdb ( medoid)	9.78287	9.09754	23.5908	89
cluster_8.pdb ( medoid)	8.54658	17.3169	34.9714	148
cluster_9.pdb ( medoid)	5.16414	10.4567	28.878	54
cluster_10.pdb ( medoid)	0.702963	18.4932	30.759	13