CABS-dock: LVDLGGPHKSHPIPSPSFMNRHITQLRVYL

Project name: LVDLGGPHKSHPIPSPSFMNRHITQLRVYL_FAPdock

Status: done

submitted: 2025-10-07 22:05:11, status changed: 2025-10-08 03:22:44

Project settings

Protein sequence(s)	IQLPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLSGLSTNHLYTHMTHFLKQCFS input pdb
Peptide sequence	LVDLGGPHKSHPIPSPSFMNRHITQLRVYL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCHHHHHHCEEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.5011	7.42345	36.2444	219
cluster_2.pdb ( medoid)	29.4212	2.58317	17.8154	76
cluster_3.pdb ( medoid)	25.263	8.51048	36.9794	215
cluster_4.pdb ( medoid)	18.9103	7.77356	19.0771	147
cluster_5.pdb ( medoid)	18.1321	6.12175	34.8937	111
cluster_6.pdb ( medoid)	8.70907	10.1044	19.797	88
cluster_7.pdb ( medoid)	3.38787	11.8068	34.3785	40
cluster_8.pdb ( medoid)	3.20999	19.0031	61.0419	61
cluster_9.pdb ( medoid)	1.24039	23.3798	41.4526	29
cluster_10.pdb ( medoid)	1.0478	13.3613	31.8838	14