CABS-dock: 1t2c&Pep5

Project name: 1t2c&Pep5

Status: done

submitted: 2025-02-04 09:56:50, status changed: 2025-02-04 16:44:03

Project settings

Protein sequence(s)	APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALA input pdb
Peptide sequence	IYKRTMELVWGLFE
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	68.8407	1.40905	3.075	97
cluster_2.pdb ( medoid)	47.2086	2.33008	13.2327	110
cluster_3.pdb ( medoid)	34.75	4.3741	18.4904	152
cluster_4.pdb ( medoid)	25.1149	6.72906	35.688	169
cluster_5.pdb ( medoid)	14.0695	4.54886	9.12414	64
cluster_6.pdb ( medoid)	13.5905	11.1107	36.9282	151
cluster_7.pdb ( medoid)	12.5082	6.23593	36.0916	78
cluster_8.pdb ( medoid)	11.2989	5.84128	29.3013	66
cluster_9.pdb ( medoid)	7.52046	7.04745	31.7814	53
cluster_10.pdb ( medoid)	6.75888	8.87721	26.8705	60