CABS-dock: PEPTIDE6

Project name: PEPTIDE6

Status: done

submitted: 2025-07-02 09:27:16, status changed: 2025-07-02 12:10:46

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	KIIFRAR
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	18.7965	3.7773	15.0242	71
cluster_2.pdb ( medoid)	16.5337	6.59261	17.8071	109
cluster_3.pdb ( medoid)	13.7189	8.60128	19.4629	118
cluster_4.pdb ( medoid)	13.1821	9.71011	22.3581	128
cluster_5.pdb ( medoid)	13.0507	11.3404	25.1941	148
cluster_6.pdb ( medoid)	12.6943	9.76816	24.7349	124
cluster_7.pdb ( medoid)	8.49655	7.29708	16.1735	62
cluster_8.pdb ( medoid)	6.68832	15.2505	38.8083	102
cluster_9.pdb ( medoid)	6.34147	10.5654	24.7251	67
cluster_10.pdb ( medoid)	5.47311	12.9725	31.0972	71