CABS-dock: a17bb09109ad1c1

Project name: a17bb09109ad1c1

Status: done

submitted: 2026-01-22 12:58:53, status changed: 2026-01-22 16:51:46

Project settings

Protein sequence(s)	EASRQQQRRFNTSSIRDFEFWLSEAETLLAMKDQQARDLASSAGNLLKKHQLLERREMLAREDALKDLNTLAEDDLLSSSGTTFNVDQIVKKKDNNVNKRFLNVQELAAAHHEKLKEAYALFQFFQDLDDEESWIEEKLIRVSSQDYGRDLQGVQNLLKKHKRLEGELVAHEEPAIQNVLDMAEKLKDKAAVGQEEIQLRLAQFVEHWEEKLKELAKARGLKLEESLEYLQFMQ input pdb
Peptide sequence	ASSDGGVRAAKETGV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.433	5.60902	28.6576	109
cluster_2.pdb ( medoid)	18.8355	9.18481	31.5156	173
cluster_3.pdb ( medoid)	16.2684	8.48268	34.8626	138
cluster_4.pdb ( medoid)	15.3247	8.93981	41.5972	137
cluster_5.pdb ( medoid)	7.26971	8.25342	22.7758	60
cluster_6.pdb ( medoid)	5.98251	15.0438	34.6409	90
cluster_7.pdb ( medoid)	3.30731	14.8157	32.6473	49
cluster_8.pdb ( medoid)	3.1664	11.0535	23.5893	35
cluster_9.pdb ( medoid)	2.58913	8.11083	21.2215	21
cluster_10.pdb ( medoid)	1.02832	14.5869	30.7972	15