CABS-dock: a215297bac126fe

Project name: a215297bac126fe

Status: done

submitted: 2025-12-25 15:48:03, status changed: 2025-12-25 17:07:19

Project settings

Protein sequence(s)	RFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS input pdb
Peptide sequence	GGGKVQIINKKLDLSNVQSKCGSKDNIKH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEEECCEECHHHHCHHCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	18.538	6.85079	25.8286	127
cluster_2.pdb ( medoid)	18.3414	10.6862	23.8733	196
cluster_3.pdb ( medoid)	17.9595	8.01803	25.655	144
cluster_4.pdb ( medoid)	14.8174	9.92078	27.2908	147
cluster_5.pdb ( medoid)	11.5171	6.16472	20.8793	71
cluster_6.pdb ( medoid)	7.70723	8.69314	20.842	67
cluster_7.pdb ( medoid)	7.2156	7.62238	18.3103	55
cluster_8.pdb ( medoid)	6.74895	12.7427	26.059	86
cluster_9.pdb ( medoid)	5.75404	15.4674	28.5745	89
cluster_10.pdb ( medoid)	2.29673	7.83724	27.7826	18