CABS-dock: a29d01e478e0bc2

Project name: a29d01e478e0bc2

Status: done

submitted: 2026-03-08 14:17:30, status changed: 2026-03-09 02:04:39

Project settings

Protein sequence(s)	VKSLKKEYSNENAVVKRMQSLQLDCVAVPSSRSNSATEQPGSLHSSQGLGMGPVEESWFAPSLEHPQEENEPSLQSKLQDEANYHLYGSRMDRQTKQQPRQNVAYNREEERRRRVSHDPFAQQRPYENFQNTEGKGTAYSSAASHGNAVHQPSGLTSQPQVLYQNNGLYSSHGFGTRPLDPGTAGPRVWYRPIPSHMPSLHNIPVPETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQIGAYNYMEIGGTSSSLLDSTNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKNCARKLGFTQSQIDEIDHDYERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLIYVSQN input pdb
Peptide sequence	VQVFGLNNY
Simulation mc cycles	50
Peptide secondary structure psipred	CCEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.0831	5.34225	21.1162	134
cluster_2.pdb ( medoid)	18.9002	9.36497	38.7535	177
cluster_3.pdb ( medoid)	17.0226	6.52074	21.4883	111
cluster_4.pdb ( medoid)	10.27	9.2502	19.631	95
cluster_5.pdb ( medoid)	10.1984	9.21714	34.2934	94
cluster_6.pdb ( medoid)	9.50828	9.25509	38.2911	88
cluster_7.pdb ( medoid)	8.51119	8.69444	30.6733	74
cluster_8.pdb ( medoid)	8.41434	14.0237	39.7663	118
cluster_9.pdb ( medoid)	7.06049	11.8972	25.8084	84
cluster_10.pdb ( medoid)	2.51078	9.95708	17.8786	25