CABS-dock: DRAMP00832M

Project name: DRAMP00832M

Status: done

submitted: 2024-07-25 15:33:36, status changed: 2024-07-25 22:28:01

Project settings

Protein sequence(s)

SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMVLPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ input pdb

Peptide sequence

GIPCAESCVWIPCTVTALLGCSCSNNVCYN

Simulation mc cycles

Peptide secondary structure psipred

CCCCCCCCEEEEEHHHHHHCCCCCCCCCCC

Contact information

163:A 1:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.0034	3.12467	5.44388	100
cluster_2.pdb ( medoid)	27.0244	3.66336	21.4766	99
cluster_3.pdb ( medoid)	19.8509	4.03004	17.5199	80
cluster_4.pdb ( medoid)	19.7573	6.0231	25.8334	119
cluster_5.pdb ( medoid)	17.9169	5.80457	16.2296	104
cluster_6.pdb ( medoid)	17.2709	10.0168	23.8241	173
cluster_7.pdb ( medoid)	12.6963	7.56124	22.9188	96
cluster_8.pdb ( medoid)	11.6811	10.7867	27.3048	126
cluster_9.pdb ( medoid)	5.35128	13.4547	26.8549	72
cluster_10.pdb ( medoid)	2.81947	10.995	21.1141	31