CABS-dock: a37ef5d6636e9d2

Project name: a37ef5d6636e9d2

Status: done

submitted: 2025-12-26 00:59:11, status changed: 2025-12-26 23:39:31

Project settings

Protein sequence(s)	EEPLVVKVEEGDNAVLQCLKGTSDGPTQQLTWSRESPLKPFLKLSLGLPGLGIHMRPLAIWLFIFNVSQQMGGFYLCQPGPPSEKAWQPGWTVNVEGSGELFRWNVSDLGGLGCGLKNRSSEGPSSPSGKLMSPKLYVWAKDRPEIWEGEPPCLPPRDSLNQSLSQDLTMAPGSTLWLSCGVPPDSVSRGPLSWTHVHPKGPKSLLSLELKDDRPARDMWVMETGLLLPRATAQDAGKYYCHRGNLTMSFHLEITARPVLWHWLLRTGGWKVSAVTLAYLIFCLCSLVGILHLQRALCIKYLLFVFNFVFWLAGGVILGVALWLRHDPQTTNLLYLELGDKPAPNTFYVGIYILIAVGAVMMFVGFLGCYGACLLGTFFTCLVILFACEVAAGIWGFVNDQIAKDVKQFYDQALQQAVVNNAKAVVKTFHETLDCCGSSTLTALTTSNLCPSGSNIISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVIMIFEMILSMVL input pdb
Peptide sequence	YFCQQGNTLPYTF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.9903	3.92454	20.7882	102
cluster_2.pdb ( medoid)	20.8469	9.5458	34.0165	199
cluster_3.pdb ( medoid)	17.9245	5.69053	29.9719	102
cluster_4.pdb ( medoid)	16.3217	4.90145	15.7476	80
cluster_5.pdb ( medoid)	11.9742	10.9402	31.599	131
cluster_6.pdb ( medoid)	8.05561	11.9172	39.5652	96
cluster_7.pdb ( medoid)	7.74604	10.8443	32.4067	84
cluster_8.pdb ( medoid)	5.69297	11.4176	26.2662	65
cluster_9.pdb ( medoid)	4.7246	10.3712	31.7401	49
cluster_10.pdb ( medoid)	1.33865	14.1934	29.1787	19