CABS-dock: a5173acd531a422

Project name: a5173acd531a422

Status: done

submitted: 2026-02-19 23:43:48, status changed: 2026-02-20 04:25:09

Project settings

Protein sequence(s)	VLLLDVTPLSLGIETMMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQH input pdb
Peptide sequence	RRIRPRPPRLPRPRPR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	61.9841	1.74238	24.6796	108
cluster_2.pdb ( medoid)	33.0735	4.05158	14.016	134
cluster_3.pdb ( medoid)	24.8738	4.54293	12.395	113
cluster_4.pdb ( medoid)	22.4311	4.85933	12.2938	109
cluster_5.pdb ( medoid)	20.5058	5.26679	24.6851	108
cluster_6.pdb ( medoid)	18.6619	7.55549	20.5319	141
cluster_7.pdb ( medoid)	10.0618	6.85765	13.5428	69
cluster_8.pdb ( medoid)	9.55478	5.4423	14.734	52
cluster_9.pdb ( medoid)	7.91968	6.18712	22.6374	49
cluster_10.pdb ( medoid)	1.16853	21.3944	41.228	25