CABS-dock: a72768053b944d4

Project name: a72768053b944d4

Status: done

submitted: 2026-02-17 05:27:27, status changed: 2026-02-17 06:10:25

Project settings

Protein sequence(s)	FSDLWKLLPSPLPSQAMDDLMLSPDDIEQWFT input pdb
Peptide sequence	PGSPPNSRL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.8498	4.18764	24.1309	125
cluster_2.pdb ( medoid)	24.3761	5.8664	17.4993	143
cluster_3.pdb ( medoid)	16.5804	9.16747	37.1813	152
cluster_4.pdb ( medoid)	14.8282	10.0484	34.7514	149
cluster_5.pdb ( medoid)	11.8714	8.6763	28.381	103
cluster_6.pdb ( medoid)	8.2383	7.04029	17.4938	58
cluster_7.pdb ( medoid)	7.29998	13.6987	38.7746	100
cluster_8.pdb ( medoid)	7.10409	8.86814	29.6001	63
cluster_9.pdb ( medoid)	6.603	9.08677	27.0567	60
cluster_10.pdb ( medoid)	3.31456	11.1629	31.0791	37