CABS-dock: a754f5c7b61d9f0

Project name: a754f5c7b61d9f0

Status: done

submitted: 2026-06-17 04:50:40, status changed: 2026-06-17 16:51:30

Project settings

Protein sequence(s)	MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG input pdb
Peptide sequence	QFIPYPN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	72.5512	2.48101	10.0531	180
cluster_2.pdb ( medoid)	64.203	2.13386	13.1069	137
cluster_3.pdb ( medoid)	27.3857	3.43245	10.9961	94
cluster_4.pdb ( medoid)	24.535	6.23599	26.7986	153
cluster_5.pdb ( medoid)	16.0883	8.57767	44.4016	138
cluster_6.pdb ( medoid)	12.669	4.42025	11.7249	56
cluster_7.pdb ( medoid)	10.5309	11.585	47.9035	122
cluster_8.pdb ( medoid)	4.59555	13.2737	60.2149	61
cluster_9.pdb ( medoid)	2.57384	12.4328	39.3383	32
cluster_10.pdb ( medoid)	2.02162	13.3557	33.8892	27