CABS-dock: 73QKSIKIDNLHVRTSAdrb10301

Project name: 73QKSIKIDNLHVRTSAdrb10301

Status: done

submitted: 2025-04-03 08:33:37, status changed: 2025-04-03 17:07:21

Project settings

Protein sequence(s)	EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA input pdb
Peptide sequence	QKSIKIDNLHVRTSA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEEEEEEECCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	50.5797	2.01662	24.0018	102
cluster_2.pdb ( medoid)	42.36	3.32861	24.0384	141
cluster_3.pdb ( medoid)	33.3764	5.30315	21.7334	177
cluster_4.pdb ( medoid)	20.2461	8.79182	32.4688	178
cluster_5.pdb ( medoid)	14.1355	7.14514	18.1891	101
cluster_6.pdb ( medoid)	12.6373	8.3879	27.2123	106
cluster_7.pdb ( medoid)	9.69418	6.49875	17.1016	63
cluster_8.pdb ( medoid)	6.95509	10.9273	30.3354	76
cluster_9.pdb ( medoid)	1.8466	16.7876	39.2641	31
cluster_10.pdb ( medoid)	1.44203	17.3366	32.042	25