CABS-dock: 1RV1-GPYGL

Project name: 1RV1-GPYGL

Status: done

submitted: 2025-08-25 08:35:00, status changed: 2025-08-25 13:02:28

Project settings

Protein sequence(s)	ETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVV input pdb
Peptide sequence	GPYGL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.4528	3.91229	22.1984	170
cluster_2.pdb ( medoid)	36.4756	5.8121	31.8547	212
cluster_3.pdb ( medoid)	30.2706	4.65799	35.4288	141
cluster_4.pdb ( medoid)	13.6271	6.89802	36.6872	94
cluster_5.pdb ( medoid)	11.9964	8.4192	24.9656	101
cluster_6.pdb ( medoid)	9.11742	8.55505	25.6507	78
cluster_7.pdb ( medoid)	8.18855	8.18216	32.4359	67
cluster_8.pdb ( medoid)	7.40901	8.36819	20.3222	62
cluster_9.pdb ( medoid)	4.94815	10.509	28.5424	52
cluster_10.pdb ( medoid)	1.62441	14.159	27.2683	23