CABS-dock: a941d4f0fe1f6a5

Project name: a941d4f0fe1f6a5

Status: done

submitted: 2026-03-23 02:19:53, status changed: 2026-03-23 07:00:53

Project settings

Protein sequence(s)	MKDYMILSGPQKTAVAVLCTLLGLLSALENVAVLYLILSSHQLRRKPSYLFIGSLAGADFLASVVFACSFVNFHVFHGVDSKAVFLLKIGSVTMTFTASVGSLLLTAIDRYLCLRYPPSYKALLTRGRALVTLGIMWVLSALVSYLPLMGWTCCPRPCSELFPLIPNDYLLSWLLFIAFLFSGIIYTYGHVLWKAHQHVASLSGHQDRQVPGMARMRLDVRLAKTLGLVLAVLLICWFPVLALMAHSLATTLSDQVKKAFAFCSMLCLINSMVNPVIYALRSGEIRSSAHHCLAHWKK input pdb
Peptide sequence	VHIALNP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	74.8119	1.44362	9.12259	108
cluster_2.pdb ( medoid)	31.2837	3.73997	13.211	117
cluster_3.pdb ( medoid)	30.4897	5.34606	12.3239	163
cluster_4.pdb ( medoid)	27.1612	3.01901	6.38347	82
cluster_5.pdb ( medoid)	26.4557	5.66985	16.2556	150
cluster_6.pdb ( medoid)	17.6218	9.98762	28.3656	176
cluster_7.pdb ( medoid)	15.4519	3.1064	10.6073	48
cluster_8.pdb ( medoid)	12.3621	9.70711	34.3133	120
cluster_9.pdb ( medoid)	7.62535	1.96712	6.77635	15
cluster_10.pdb ( medoid)	4.15396	5.05542	10.3413	21