CABS-dock: a9622fa3ba5a593

Project name: a9622fa3ba5a593

Status: done

submitted: 2026-07-23 01:32:01, status changed: 2026-07-23 05:58:02

Project settings

Protein sequence(s)	QVQLVQSGSELKEPGASVKVSCKASGYLFTSYVMNWVRQAPGQGLEWMGWINTNTGNPRYAQVFTGRFVFSLDTSVSTAYLQISRLKAEDTAMYYCARERVVGLEDAFDLWGQGTMLTVSSSYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKSGQAPVLVVFDDSDRPSGVPERFSGSNSGNTATLTISRVEAGDEADYYCQMWDGSSDHPLFGGGTKLTVL input pdb
Peptide sequence	HYANLKNRRRRVARR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHHHCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.9323	2.57247	15.9711	77
cluster_2.pdb ( medoid)	25.398	7.91402	47.412	201
cluster_3.pdb ( medoid)	23.2116	5.04058	32.067	117
cluster_4.pdb ( medoid)	16.1877	6.85705	33.9878	111
cluster_5.pdb ( medoid)	15.6414	4.98676	15.3184	78
cluster_6.pdb ( medoid)	12.1256	6.76253	21.1839	82
cluster_7.pdb ( medoid)	11.052	11.5816	38.5066	128
cluster_8.pdb ( medoid)	10.7671	9.56615	36.89	103
cluster_9.pdb ( medoid)	6.28405	6.68359	25.8714	42
cluster_10.pdb ( medoid)	4.37887	13.9305	54.0437	61