CABS-dock: GTFB

Project name: GTFB_PEP

Status: done

submitted: 2026-04-05 08:41:48, status changed: 2026-04-05 18:58:35

Project settings

Protein sequence(s)	MNLPQNIRYRRYQDWTEEEIKSIKTNVALSPWHTTYHIEPKTGLLNDPNGFSYFNGKFNLFYQNWPFGAAHGLKSWIHTESEDLVHFKETGTVLYPDTSHDSHGAYSGSAYEIGDQLFLFYTGNVRDENWVRHPLQIGAFMDKKGNIQKFTDVLIKQPNDVTEHFRDPQIFNYKGQFYAIVGAQSLDKKGFIKLYKAVDNDIKNWQEVGNLDFGGSKSEYMIECPNLVFINEQPVLIYSPQGLSKSELDYHNIYPNTYKVCQSFDTEKPALVDASEIQNLDFGFECYATQAFNAPDGRVYAVSWIGLPDIDYPSDSYDYQGALSLVKELSLKHGKLYQYPVEAVRSLRSEKEAVTYKPETNNTYELELTFDSSSVNELLLFADNKGNGLAITVDTKMGTILIDRSKAGEQYALEFGSQRSCSIQAKETVVNIFVDKSIFEIFINKGEKVFTGRVFPNDKQTGIVIKSGKPSGNYYELKY input pdb
Peptide sequence	TQANFNTLRSLGVKGAVVKA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHHHCCCCCEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.9957	5.38551	14.0394	140
cluster_2.pdb ( medoid)	23.7278	5.39451	34.6262	128
cluster_3.pdb ( medoid)	22.8146	4.82146	18.7389	110
cluster_4.pdb ( medoid)	19.0856	5.44914	17.8373	104
cluster_5.pdb ( medoid)	11.504	6.51946	22.6833	75
cluster_6.pdb ( medoid)	8.1687	14.0781	30.6685	115
cluster_7.pdb ( medoid)	6.83365	14.9261	62.5931	102
cluster_8.pdb ( medoid)	4.97603	6.83276	15.214	34
cluster_9.pdb ( medoid)	4.29972	6.27948	11.4072	27
cluster_10.pdb ( medoid)	4.29588	17.9241	33.8823	77