CABS-dock: aa4ef361648df7d

Project name: aa4ef361648df7d

Status: done

submitted: 2026-07-27 04:52:02, status changed: 2026-07-27 06:59:34

Project settings

Protein sequence(s)	MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIRGEGVAAQVLVKLGAELTRVRQQVIQLLSG input pdb
Peptide sequence	MEVVMIDATFVDMLLMEWMV
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEEHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.1969	2.82011	10.8852	119
cluster_2.pdb ( medoid)	37.0217	5.0511	11.8641	187
cluster_3.pdb ( medoid)	26.6979	3.82052	14.0045	102
cluster_4.pdb ( medoid)	22.238	6.88012	19.2883	153
cluster_5.pdb ( medoid)	21.3801	3.97566	10.4818	85
cluster_6.pdb ( medoid)	19.9319	6.27136	26.211	125
cluster_7.pdb ( medoid)	14.0757	4.97313	14.3926	70
cluster_8.pdb ( medoid)	6.41477	13.0948	25.4387	84
cluster_9.pdb ( medoid)	5.1632	9.49024	26.8364	49
cluster_10.pdb ( medoid)	2.63679	9.86047	23.1415	26