Project name: 4_SRC_RUTU

Status: done

submitted: 2023-11-27 16:03:48, status changed: 2023-11-28 02:54:08

Project settings
Protein sequence(s) TFVALYDYESRTETDLSFKKGERLQIVNNTEEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP input pdb
Peptide sequence RLLLRLLLGY
Simulation mc cycles50
Peptide secondary structure psipred CHHHHHHHCC
Contact information
273:A 295:A 340:A 341:A 404:A
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 73.0074 1.04099 1.92326 76
cluster_2.pdb ( medoid) 46.6294 2.35903 19.6735 110
cluster_3.pdb ( medoid) 27.9112 6.19822 37.2227 173
cluster_4.pdb ( medoid) 24.2247 9.24675 44.8606 224
cluster_5.pdb ( medoid) 16.7396 1.43372 2.6863 24
cluster_6.pdb ( medoid) 10.1117 9.09835 33.056 92
cluster_7.pdb ( medoid) 8.32441 8.76939 39.9603 73
cluster_8.pdb ( medoid) 7.84435 13.3854 34.6906 105
cluster_9.pdb ( medoid) 4.769 16.5653 38.48 79
cluster_10.pdb ( medoid) 3.15899 13.9285 35.5761 44