CABS-dock: ad53ebf67dbd524

Project name: ad53ebf67dbd524

Status: done

submitted: 2025-12-31 16:00:20, status changed: 2025-12-31 18:09:45

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	RVIVQVGSNCFR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.9201	5.73834	24.6659	143
cluster_2.pdb ( medoid)	22.8876	6.02947	26.5414	138
cluster_3.pdb ( medoid)	21.6063	5.13739	22.6176	111
cluster_4.pdb ( medoid)	16.3055	10.4873	32.6961	171
cluster_5.pdb ( medoid)	11.2323	9.34806	25.0111	105
cluster_6.pdb ( medoid)	8.97079	7.91458	17.6348	71
cluster_7.pdb ( medoid)	8.87944	6.53194	16.6503	58
cluster_8.pdb ( medoid)	8.46446	6.02519	12.1089	51
cluster_9.pdb ( medoid)	8.14124	12.7745	31.1321	104
cluster_10.pdb ( medoid)	7.29507	6.57978	18.5317	48