CABS-dock: ad59015561f6349

Project name: ad59015561f6349

Status: done

submitted: 2026-07-16 09:21:51, status changed: 2026-07-16 13:02:11

Project settings

Protein sequence(s)	GSHMMLEADLELERAADVRRWEEQAEISSGSSSPPILSSISIKNEEEEQTLGLLEDGAYRIKQKGILGYSQIGAGVYYKEGTFHTMWHVTRRRGAVLMHKGKRIEPSWADVKKDLISYGGGGWKLEGEWKEGEEVQVLLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVVVTRSGAYYVSAIAN input pdb
Peptide sequence	DFQNHEAGHFTLGDS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.8384	3.23675	22.1597	116
cluster_2.pdb ( medoid)	27.4018	6.05799	39.4457	166
cluster_3.pdb ( medoid)	12.6879	13.6351	43.8045	173
cluster_4.pdb ( medoid)	11.5777	5.78697	20.5964	67
cluster_5.pdb ( medoid)	10.3103	7.56525	24.5497	78
cluster_6.pdb ( medoid)	9.13426	7.66346	30.1015	70
cluster_7.pdb ( medoid)	8.60872	13.707	33.7024	118
cluster_8.pdb ( medoid)	7.59641	8.55667	18.4841	65
cluster_9.pdb ( medoid)	4.90937	13.24	37.2946	65
cluster_10.pdb ( medoid)	4.28605	19.1318	41.2274	82