CABS-dock: ad64f0ac3f55c45

Project name: ad64f0ac3f55c45

Status: done

submitted: 2026-01-21 18:03:34, status changed: 2026-01-22 03:20:23

Project settings

Protein sequence(s)	PMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	KDVNFGTPDSTVQNPQDASKPNDSQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCHHHCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.5869	3.44747	19.3175	102
cluster_2.pdb ( medoid)	21.2127	11.7382	35.0882	249
cluster_3.pdb ( medoid)	14.5411	7.35847	19.8772	107
cluster_4.pdb ( medoid)	10.5414	9.77097	28.501	103
cluster_5.pdb ( medoid)	9.5305	7.44977	26.1612	71
cluster_6.pdb ( medoid)	6.40175	10.1535	20.6194	65
cluster_7.pdb ( medoid)	4.79695	16.8857	31.5932	81
cluster_8.pdb ( medoid)	4.51534	10.6304	23.8595	48
cluster_9.pdb ( medoid)	4.19021	12.4099	31.4975	52
cluster_10.pdb ( medoid)	2.19418	10.0265	23.0973	22