CABS-dock: 20256-1ei7-luan-cabs

Project name: 20256-1ei7-luan-cabs

Status: done

submitted: 2026-05-09 06:14:07, status changed: 2026-05-09 13:06:15

Project settings

Protein sequence(s)	SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPATSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT input pdb
Peptide sequence	PKFPMEIV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	115.791	0.906804	10.0921	105
cluster_2.pdb ( medoid)	58.1184	2.44329	7.98189	142
cluster_3.pdb ( medoid)	34.1946	3.01217	24.1604	103
cluster_4.pdb ( medoid)	29.6314	6.37838	22.9923	189
cluster_5.pdb ( medoid)	15.6004	6.47419	32.3661	101
cluster_6.pdb ( medoid)	12.2104	10.7285	37.7527	131
cluster_7.pdb ( medoid)	11.4398	8.74143	28.881	100
cluster_8.pdb ( medoid)	9.2775	4.74266	10.2591	44
cluster_9.pdb ( medoid)	4.40826	10.6618	27.0665	47
cluster_10.pdb ( medoid)	2.59893	14.6214	34.6249	38