CABS-dock: primed p18

Project name: primed p18

Status: done

submitted: 2025-05-09 14:44:05, status changed: 2025-05-09 19:45:42

Project settings

Protein sequence(s)	TPIATFVSGSPSLNTYNATTVNSSANAFSCAYYLQQWNIQGLLVTSLYLKLDSATMGNRPGDLNSANAKWFTFWVSAYLQQCNPSGIQAGTVSPSTATLTDFEPMANRSVTSPWTYSANGYYEPSIGEFQVFSPVVTGAWNPGNIGIRVLPVPVSASGERYTLLCYSLQCTNASIFNPNNSGTMIVGPVLYSCPAASLP input pdb
Peptide sequence	WWHHHC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.9343	5.00844	33.9792	195
cluster_2.pdb ( medoid)	24.4171	7.3719	18.0694	180
cluster_3.pdb ( medoid)	23.5364	5.94822	15.8742	140
cluster_4.pdb ( medoid)	18.4957	5.40666	11.8407	100
cluster_5.pdb ( medoid)	15.8084	4.23826	25.5833	67
cluster_6.pdb ( medoid)	10.6022	7.26261	25.6344	77
cluster_7.pdb ( medoid)	9.11415	7.8998	15.4645	72
cluster_8.pdb ( medoid)	7.37346	8.67978	32.7168	64
cluster_9.pdb ( medoid)	7.0486	8.51233	24.3695	60
cluster_10.pdb ( medoid)	5.33586	8.43351	17.1611	45