CABS-dock: C-4J8S

Project name: C-4J8S

Status: done

submitted: 2026-01-12 17:43:08, status changed: 2026-01-12 20:35:45

Project settings

Protein sequence(s)	QQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASSISHFMQFPHHLQQEYIEYGQQSRDPPVK input pdb
Peptide sequence	APSQSQSRLPQWTHPNSMD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.3311	4.25307	21.9419	129
cluster_2.pdb ( medoid)	28.0941	3.13233	12.1706	88
cluster_3.pdb ( medoid)	26.1612	8.67697	24.3967	227
cluster_4.pdb ( medoid)	20.5386	3.89511	12.0826	80
cluster_5.pdb ( medoid)	14.8132	4.99553	13.124	74
cluster_6.pdb ( medoid)	13.7329	8.73811	28.9862	120
cluster_7.pdb ( medoid)	12.0809	8.60866	25.0741	104
cluster_8.pdb ( medoid)	5.99706	17.5086	39.3562	105
cluster_9.pdb ( medoid)	2.89539	14.1604	32.5273	41
cluster_10.pdb ( medoid)	2.12976	15.0252	35.99	32