CABS-dock: aec0a778410c5e3

Project name: aec0a778410c5e3

Status: done

submitted: 2026-07-16 13:44:03, status changed: 2026-07-16 16:12:25

Project settings

Protein sequence(s)	LTSSERIDKQIRYILDGISALRKETCNKSNMCENLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM input pdb
Peptide sequence	TPIMSMPPLLK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.7947	3.22797	13.2901	122
cluster_2.pdb ( medoid)	34.8227	3.7332	11.7147	130
cluster_3.pdb ( medoid)	29.9251	3.67584	9.8962	110
cluster_4.pdb ( medoid)	24.9729	4.04438	11.0922	101
cluster_5.pdb ( medoid)	20.6552	6.77797	17.8383	140
cluster_6.pdb ( medoid)	15.7009	8.72559	21.4215	137
cluster_7.pdb ( medoid)	14.5442	8.80075	19.6297	128
cluster_8.pdb ( medoid)	7.80182	7.43416	21	58
cluster_9.pdb ( medoid)	5.32785	6.56925	16.5305	35
cluster_10.pdb ( medoid)	3.64566	10.6976	22.7316	39