CABS-dock: af3abe8d0619613

Project name: af3abe8d0619613

Status: done

submitted: 2026-07-16 08:43:01, status changed: 2026-07-16 14:43:38

Project settings

Protein sequence(s)	MANSEKDVSVINGIQTTLSQLSLYKGRVDGLFGKGCRDAVIHMVNVVYPGKVMKYPENNYEAKSVYTFLQTVLAQVGLYTIAIDGKWGNGSATAFNGLVDQYRTASTTQGGDQPVHLTEAQFKAMLPSANWDKVPVYLSAINEAMEVFDITTPLRKAHFMAQVLHETANLKYSEEIASGKAYEGRADLGNTKPGDGPLFKGRGLLQLTGRDNYLKCQTYLRQRLNDPRFDITSDVTKASQLSTNPLYAALASGYFWHSIKPKLNATADKDDIYWCSVYVNGYAKQTHPYYPDRDKEPNHMKERVQMLSVTKKAFGLI input pdb
Peptide sequence	GKVGGQAGAHGAEAL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.3234	5.42686	16.3039	132
cluster_2.pdb ( medoid)	20.9161	6.93246	19.4108	145
cluster_3.pdb ( medoid)	16.5291	5.62643	19.934	93
cluster_4.pdb ( medoid)	15.9001	9.11942	35.9911	145
cluster_5.pdb ( medoid)	15.5281	5.15194	10.6334	80
cluster_6.pdb ( medoid)	10.5413	7.49432	24.3613	79
cluster_7.pdb ( medoid)	10.5034	8.18783	19.7885	86
cluster_8.pdb ( medoid)	6.45852	13.9351	33.1085	90
cluster_9.pdb ( medoid)	5.67152	4.93695	8.41094	28
cluster_10.pdb ( medoid)	1.28205	17.16	33.6114	22